Section C: Developmental Changes and Cellular Transformations
Both amoebae and plasmodia can develop or reversibly transform into other cell types (Dove et al. 1986; Burland et al., 1993a). So far, the changes that have been most thoroughly analysed biochemically are those exhibited by plasmodia, since these can be induced to occur in large cell masses with good synchrony. Spherulation is a reversible transformation of plasmodia, in response to conditions of nutrient deprivation. It involves the formation of resistant, cyst-like spherules or sclerotia, which can survive drying and other extreme conditions. The spherules are multinucleate and they yield plasmodia when placed in moist, nutrient conditions. Sporulation is a developmental phase, involving complex changes in morphology, cytoplasmic cleavage, melanisation and meiosis, leading to the formation of spores containing haploid uninucleate amoebae. Sporulation can be induced to occur by exposing plasmodia to light in conditions of nutrient deprivation. Precise conditions for inducing sporulation with good synchrony have been described (Raub & Aldrich, 1982; Starostzik & Marwan, 1995). Studies of spherulation and sporulation have resulted in descriptions of many of the processes involved and have shown that changes in gene expression occur when a plasmodium ceases vegetative growth and enters either of these transitional phases. Since plasmodia are multinucleate, it has been difficult to screen for mutants in these processes by classical methods. Some of the genes involved are now also being identified by molecular methods. In contrast, the transformations of amoebae have been less studied biochemically but have been easier to approach genetically. Amoebae can change into three alternative cell- types: cysts, flagellates, and plasmodia (Anderson et al. 1986). The transformations of amoebae into cysts or flagellates are reversible and can apparently be induced repeatedly in the same cells. Encystment Amoebae cultured on bacterial lawns form walled cysts when the food supply is exhausted and in other conditions unfavourable for growth, such as refrigeration. Contrary to previous reports, a G1 stage is not involved during this process (Anderson et al., 1997) Cysts are valuable for the storage of amoebal strains, although it is not clear whether encystment is essential for amoebae to survive freezing in glycerol. Amoebae cultured in liquid axenic medium may be induced to form rounded cells by the addition of mannitol, but these cells are not walled cysts and they revert rapidly to active cells when growth conditions are restored (Dee et al., 1997). Encystment can be induced in axenic conditions but it apparently requires a solid substratum as well as nutrient deprivation. Strains differ in their ability to encyst and this property can be lost during log-term culture of amoebae (see Section B). There is little doubt that encystment requires specific gene expression though the genes have not yet been identified by either classical or molecular methods. Excystment can be readily induced in nutrient conditions or suspension in water or buffer (Gorman et al., 1977; Dee et al, 1997; see Section B). The amoeba-flagellate transformation Amoebae cultured on bacterial lawns can be induced to transform into flagellates with good synchrony when the plates are flooded with water or various buffers (Pagh & Adelman, 1982). Flagellates can neither feed nor divide, but they can transform into amoebae again in nutrient conditions, particularly when allowed to attach to a surface. The amoebae then resume feeding and proliferating. Although the changes are quite easily controllable in most amoebal strains, the precise signals triggering either transformation are not understood. Suspension in liquid is not enough to cause amoebae to transform into flagellates, for example; there is evidence that ionic strength is an important factor. Studies of changes in gene expression during the amoeba- flagellate transformation have been carried out on cells cultured on bacteria or in axenic medium (Green & Dove, 1984; Paul et al, 1992). The reverse transformation has been less well studied but there has been at least one detailed microscopic examination of this (Glyn & Gull, 1990). It should be noted that both transformations occur extremely rapidly, so that great care is necessary to ensure that the cells have not begun to change without the investigator's knowledge. For example, amoebae washed off plates may start to form flagellates while a supposedly 'amoebal' population is being harvested prior to biochemical analysis. Conversely, a suspension of 'flagellates' may be rapidly transforming to amoebae if allowed to stand for some minutes. Mutant strains of amoebae unable to transform into flagellates apparently occur at quite high frequencies and are not difficult to isolate (Mir et al. 1979); few have yet been analysed genetically or biochemically, however. Some strains of amoebae able to grow in axenic liquid medium (e.g. CLd-AXE) were also found to be unable to form flagellates, but further investigations have shown that this defect is not necessarily associated with the ability to grow in liquid. Following the isolation of new Axe strains from crosses (see Section A), a method was worked out for inducing some of these strains to form flagellates with high efficiency in axenic conditions (Blindt, 1987; Dee et al, 1989). This method has facilitated biochemical studies of the amoeba-flagellate transformation, but the following precautions should be observed in using Axe strains for such investigations. First, to induce flagellate formation in axenic conditions, amoebae must be transferred very gradually from the growth medium into a medium of low ionic strength, as described in the published method; rapid transfer will result in death, apparently due to osmotic shock. The same strain of amoebae may be found to form flagellates quite successfully if suddenly transferred to water from a bacterial lawn, but in these growth conditions, the cells are apparently in a more robust state. Second, the published method for inducing flagellate formation in axenic conditions was worked out for a particular Axe strain (LU352) and was found to be unsuccessful when applied to some other Axe strains (e.g. LU353). The latter strains appear to be even more sensitive to osmotic shock, and their failure to form flagellates is perhaps due to this sensitivity. When suspended in water from cultures on bacterial lawns, strains such as LU353 show almost normal capacity to transform into flagellates (Dee et al. 1989). Third, if a strain such as LU352 is maintained in liquid, axenic culture for long periods, the amoebae apparently lose the ability to transform into flagellates (Glyn, 1989). This change may be due to inadvertent selection for mutant cells unable to transform into the non-feeding flagellate stage; such mutants may be at a selective advantage during culture in a liquid medium, perhaps because flagellates do not feed. Alternatively, the change may be due to a modification of the amoebae which is inherited during vegetative propagation. In any case, it will be advisable to return to stored stocks of the Axe amoebal strain at intervals if ability to undergo the transformation efficiently is to be maintained. The amoebal-plasmodial transition In natural isolates of P. polycephalum, plasmodium development involves mating of amoebae to form zygotes which then develop into multinucleate, diploid plasmodia. For studies of changes in gene expression or cellular organization during development, however, apogamic strains have usually been preferred because amoebae form haploid plasmodia without changing in DNA content (Bailey et al, 1992; Solnica-Krezel et al, 1990, 1991). Although they are a sensible choice for this purpose, it should not be forgotten that apogamic strains arose in laboratories as the result of mutations. Some of their characteristics may therefore be indirect consequences of the mutations and may have no significance in relation to wild-type strains. For example, apogamic development is temperature-sensitive but sexual development is not. Where possible, it is desirable that wild- type, sexual development should be studied also. It must also be remembered that apogamic (e.g. npfC+) amoebae are liable to lose their ability to develop if cultured in conditions permissive for development (see Section B). This loss can occur extremely rapidly, within a few subcultures, and the characteristics of the strain must therefore be checked frequently, for example, by plating out a sample of the amoebae to give single colonies and checking that plasmodium formation occurs in all colonies after the expected number of days. Amoebae blocked in apogamic development, such as npfC mutants of npfC+ strains, may be useful for comparisons of gene expression in amoebae and plasmodia, since they are more easily maintained in vegetative growth, as explained in Section B. Although plasmodia of genotype npfC cannot be obtained, revertant npfC+ plasmodia can be used for the comparison since they may be assumed to differ from the amoebae at this single locus only. For studies of changes occurring during the developmental transition, however, npfC+ or similar strains, capable of efficient apogamic development, must be used. The changes associated with plasmodium development in individual cells have been studied by analysis of time-lapse films of cultures maintained in cavity slides on lawns of bacteria (see section B). Both apogamic development and sexual development have been studied in this way (Bailey et al, 1987, 1990). The lesions in some mutants blocked in apogamic development have also been analysed (Bailey et al, 1992, Solnica-Krezel et al, 1995). Other important approaches have involved assays of cell populations developing from amoebae to plasmodia with partial synchrony. Several different methods may be used to estimate the frequencies in a single population of (a) cells committed to plasmodium development, (b) cells able to transform into flagellates, and (c) cells that have become binucleate or multinucleate. Cells committed to plasmodium development can be recognized by plating out cell samples at low densities on bacterial lawns; the committed cells grow to give individual, multinucleate plasmodia, while the cells that have not become committed multiply to give colonies of amoebae (Youngman et al. 1977). By combining the results of these different assays with film analyses, it has been deduced that apogamic amoebae cultured at permissive temperature proliferate until they reach a critical cell density. The amoebae then cease to divide and enter an extended cell cycle, more than twice the length of the amoebal cell cycle, during which they continue to grow and finally undergo mitosis without cytokinesis to give binucleate cells (Bailey et al. 1987). About halfway through this extended cell cycle, an amoeba loses the ability to form a flagellate, and at about the same time, it becomes committed to plasmodium development (Blindt et al. 1986; Bailey et al. 1987). Thus, in an asynchronous population of cells, at early stages of development, soon after the critical cell density is reached, the majority of committed cells are uninucleate. At later stages, however, many committed cells have two or more nuclei. So far, there have been only a few attempts to follow biochemical changes during the amoebal-plasmodial transition, and these have involved asynchronous populations of apogamic amoebae developing on bacterial lawns (Solnica-Krezel et al., 1990, 1991; Bailey, 1997). If the timing of changes in relation to the extended cell cycle is to be established, it is obviously important for each cell sample to be assayed for the proportion of committed cells and the proportions of cells with different numbers of nuclei. Even where this has been done, however, there is still much uncertainty about the timing of a change in gene expression, because of the lack of synchrony and the resulting contamination of each cell sample with cells at other stages of development. Ideally, we should like to be able to control development and initiate it at a specified time. There have been several different approaches to this problem, none of them as yet successful. The simplest approach to controlling the onset of development has been to inoculate a lawn of bacteria with an evenly-spread lawn of amoebae, at a specific cell density; the denser the amoebae, the earlier the onset of the transition. High frequencies of committed cells have been achieved by this method (Solnica-Krezel et al, 1988) but a proportion of cells with two or more nuclei will usually be present among them. To avoid including cells with more than one nucleus, and thus to restrict analysis to cells still passing through the extended cell cycle, populations of cells at early stages of development, containing low frequencies of committed cells, have been enriched for the presence of cells unable to transform into flagellates (Blindt et al. 1986). The enrichment process involves passing cells through a glass bead column. Very high densities of committed cells have been obtained by this method, but there are problems in obtaining large enough samples for some types of analysis, and the method also has the disadvantage that several hours must elapse between harvesting the developing culture and analysing the committed cells. n non-axenic strains, such as CL, developing cells acquire the ability to grow in liquid, axenic medium (SDM) at about the time of commitment, whereas cells at all earlier stages of development fail to survive in SDM. Thus it is possible to selectively culture and study later stages of development by inoculating cells into liquid SDM from asynchronous populations. The reason for the asynchrony of development in bacterial cultures is that the amoebae distribute themselves unevenly as they graze on the bacterial lawn. Since development depends upon a critical cell density, it is initiated at different times in different areas of the culture. Apogamic strains able to grow and develop in axenic medium were constructed in the hope that more homogeneous conditions, and consequently more synchronous development, could be achieved. So far, however, these strains have not been induced to develop with good efficiency in axenic conditions, even though they do show efficient apogamic development on bacterial lawns (Dee et al. 1989). Another approach to controlling plasmodium development has been an attempt to identify the diffusible inducer responsible for the density-dependent onset of the amoebal-plasmodial transition. Although partial purification of the inducer has been achieved (Nader et al. 1984) however, preparation of quantities sufficient to induce development reliably has not been described. It should also be noted that the inducer has been extracted from cultures of Didymium amoebae, not from Physarum. Since cultures of amoebae always produce inducer during growth, it may also be necessary to isolate an 'inducerless mutant' before development can be controlled cleanly by external application of the substance. Biochemical studies of sexual development are harder to interpret since this involves changes in gene content as well as expression. The formation of cells committed to sexual development apparently coincides with cell fusion (Shipley & Holt, 1982), and this event can be precisely controlled by mixing two strains of amoebae at a specific time. If strains differing in matA, matB and matC are used, mating occurs with high frequency. The frequency of committed cells in a mating population remains lower than in an apogamic strain, however, since it depends on the meeting of compatible amoebae. Filming analysis has shown that following mating, sexual development, like apogamic development, involves an extended cell cycle, preceding the formation of a binucleate cell which develops into a plasmodium (Bailey et al. 1990).
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